Basic Information
Locus ID:
nbisL1-mrna-3549
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002179F_pilon | 4120376 | 4124342 | + | nbisL1-mrna-3549 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 67,920.46 Da | 38.40 | 97.23 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 321 | 380 | 1.4E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 87 | 143 | 1.1E-10 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 282 | 316 | 0.05 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 21 | 58 | 3.3E-5 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 46 | 389 | 2.52E-48 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 281 | 401 | 2.0E-33 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 20 | 280 | 5.4E-63 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 367 | 389 | 70.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 85 | 107 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 343 | 366 | 41.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 108 | 131 | 0.0016 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 182 | 206 | 78.0 | IPR003591 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 596 | 633 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_034920413.1 | receptor-like kinase TMK4 [Populus alba] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5R1Q4 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology