halophFGD

Basic Information

Locus ID: nbisL1-mrna-3546

Species & Taxonomic ID: Hibiscus hamabo Siebold & Zucc. & 1841

Genome Assembly:

Description: heterochromatin assembly

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	52325254	52327623	-	nbisL1-mrna-3546

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.17	8,230.25 Da	77.61	48.03	-0.79

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00628	PHD-finger	5	44	4.6E-11	IPR019787
SUPERFAMILY	SSF57903	FYVE/PHD zinc finger	1	48	6.64E-16	IPR011011
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	1	60	1.5E-16	IPR013083
SMART	SM00249	PHD_3	7	43	6.5E-4	IPR001965

Best hit

Source	Best Hit ID	Description
TAIR	AT4G22140.2	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein.
RefSeq	XP_021294204.1	chromatin remodeling protein EBS [Herrania umbratica]
Swiss-Prot	F4JL28	Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1
TrEMBL	A0A6J1B6N6	chromatin remodeling protein EBS OS=Herrania umbratica OX=108875 GN=LOC110424050 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg21078, jg24782, jg28788, jg30318, jg966
Aizoaceae	Mesembryanthemum crystallinum	1	gene_26463
Amaranthaceae	Atriplex hortensis	4	Ah010192, Ah017448, Ah017452, Ah039179
Amaranthaceae	Beta vulgaris	2	BVRB_8g185500, BVRB_9g216970
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg12392, Sbi_jg40213, Sbi_jg45942, Sbi_jg50194
Amaranthaceae	Salicornia europaea	2	Seu_jg1796, Seu_jg20280
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00011382, GOSA_00022485
Amaranthaceae	Suaeda glauca	4	Sgl41601, Sgl46396, Sgl56164, Sgl61605
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000009590, gene:ENSEOMG00000017636 ... gene:ENSEOMG00000032965, gene:ENSEOMG00000038653, gene:ENSEOMG00000047386, gene:ENSEOMG00000050164
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.7BG0007220, CQ.Regalona.r1.8BG0001180 ... CQ.Regalona.r1.9AG0017310
Anacardiaceae	Pistacia vera	3	pistato.v30018030, pistato.v30068540, pistato.v30068900
Apiaceae	Apium graveolens	12	Ag11G03281, Ag1G00948, Ag1G01160, Ag2G01748, Ag3G00008 ... Ag4G00982, Ag6G02725, Ag9G01586, Ag9G01587, Ag9G01588, Ag9G01589, Ag9G01590
Arecaceae	Cocos nucifera	5	COCNU_01G009800, COCNU_06G013010, COCNU_08G004540 ... COCNU_11G000860, COCNU_11G008520
Arecaceae	Phoenix dactylifera	5	gene-LOC103705189, gene-LOC103710006, gene-LOC103711576 ... gene-LOC103712018, gene-LOC103717794
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.169.V1.1, AsparagusV1_03.2000.V1.1 ... AsparagusV1_05.3182.V1.1, AsparagusV1_07.1154.V1.1
Asteraceae	Flaveria trinervia	4	Ftri11G12016, Ftri14G10952, Ftri4G27293, FtriNA19118
Brassicaceae	Arabidopsis thaliana	3	AT4G04260.1, AT4G22140.1, AT4G39100.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10026157m.g.v1.0, Thhalv10026181m.g.v1.0 ... Thhalv10028947m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp6g04540.v2.2, Sp7g20290.v2.2, Sp7g36730.v2.2
Brassicaceae	Brassica nigra	4	BniB02g079700.2N, BniB03g015400.2N, BniB03g021810.2N ... BniB05g014960.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G2364, Ceq04G1658
Casuarinaceae	Casuarina glauca	3	Cgl02G2447, Cgl04G1833, Cgl07G1642
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno04g05640, gene.Cymno05g06490, gene.Cymno06g10780
Dunaliellaceae	Dunaliella salina	1	Dusal.0105s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g26190, gene.Thate04g25430, gene.Thate04g29070
Malvaceae	Hibiscus hamabo Siebold & Zucc.	6	nbisL1-mrna-1034, nbisL1-mrna-1036, nbisL1-mrna-3194 ... nbisL1-mrna-3546, nbisL1-mrna-6473, nbisL1-mrna-7716
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.2111, evm.TU.LG08.190, evm.TU.LG11.377
Plantaginaceae	Plantago ovata	4	Pov_00005987, Pov_00005989, Pov_00007479, Pov_00031648
Plumbaginaceae	Limonium bicolor	2	Lb2G15012, Lb3G17343
Poaceae	Echinochloa crus-galli	6	AH03.1815, BH03.1952, BH03.545, CH03.2158, CH03.632 ... CH08.1761
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_6AG0534300, gene-QOZ80_6BG0487360 ... gene-QOZ80_7AG0558670, gene-QOZ80_7BG0589820, gene-QOZ80_8AG0631150, gene-QOZ80_8BG0659910, gene-QOZ80_8BG0659920
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0147590.1, HORVU.MOREX.r3.5HG0478440.1 ... HORVU.MOREX.r3.5HG0520250.2
Poaceae	Lolium multiflorum	2	gene-QYE76_031946, gene-QYE76_042887
Poaceae	Oryza coarctata	7	Oco05G026220, Oco06G027120, Oco14G003160, Oco15G008470 ... Oco16G008020, Oco17G004120, Oco18G004060
Poaceae	Oryza sativa	4	LOC_Os03g58530.1, LOC_Os07g08880.1, LOC_Os08g32620.1 ... LOC_Os09g21770.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G059600, gene-BS78_02G173400 ... gene-BS78_07G137400
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0103260, Pt_Chr0200756, Pt_Chr0303743, Pt_Chr0403232
Poaceae	Sporobolus alterniflorus	11	Chr10G010760, Chr11G011660, Chr14G013340, Chr16G014170 ... Chr17G013530, Chr19G016980, Chr20G006080, Chr21G012480, Chr24G000130, Chr28G002190, Chr29G005820
Poaceae	Thinopyrum elongatum	4	Tel2E01G453600, Tel3E01G227300, Tel5E01G336800 ... Tel5E01G698300
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG031170, gene_TRIDC2BG034680 ... gene_TRIDC5AG032510, gene_TRIDC5AG063830, gene_TRIDC5BG034350, gene_TRIDC5BG068580
Poaceae	Triticum aestivum	9	TraesCS2A02G227100.2, TraesCS2B02G257000.1 ... TraesCS2D02G242500.1, TraesCS5A02G201700.1, TraesCS5A02G445200.2, TraesCS5B02G200300.1, TraesCS5B02G450300.1, TraesCS5D02G208000.1, TraesCS5D02G453200.1
Poaceae	Zea mays	5	Zm00001eb041990_P003, Zm00001eb099070_P001 ... Zm00001eb179130_P002, Zm00001eb302190_P001, Zm00001eb311820_P004
Poaceae	Zoysia japonica	7	nbis-gene-16943, nbis-gene-19971, nbis-gene-26773 ... nbis-gene-30939, nbis-gene-35630, nbis-gene-39201, nbis-gene-45109
Poaceae	Zoysia macrostachya	6	Zma_g23000, Zma_g24071, Zma_g30260, Zma_g32459, Zma_g4834 ... Zma_g6113
Portulacaceae	Portulaca oleracea	8	evm.TU.LG01.1928, evm.TU.LG02.327, evm.TU.LG08.1784 ... evm.TU.LG09.1594, evm.TU.LG14.1110, evm.TU.LG18.924, evm.TU.LG20.948, evm.TU.LG22.65
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g14640, gene.Posoc03g06830
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_13_RagTag.25, evm.TU.Scaffold_1_RagTag.2239 ... evm.TU.Scaffold_2_RagTag.175, evm.TU.Scaffold_5_RagTag.1549, evm.TU.Scaffold_9_RagTag.1370
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-20396, nbisL1-mrna-20505, nbisL1-mrna-23977 ... nbisL1-mrna-29798, nbisL1-mrna-5032
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-1208, nbisL1-mrna-16532, nbisL1-mrna-17194 ... nbisL1-mrna-5457, nbisL1-mrna-755, nbisL1-mrna-9932
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-20753, nbisL1-mrna-21369, nbisL1-mrna-21727 ... nbisL1-mrna-3310, nbisL1-mrna-9427
Rhizophoraceae	Kandelia candel	6	add.evm.TU.utg000006l.376, evm.TU.utg000003l.857 ... evm.TU.utg000009l.1127, evm.TU.utg000015l.18, evm.TU.utg000016l.121, evm.TU.utg000027l.15
Rhizophoraceae	Kandelia obovata	6	Maker00006180, Maker00009711, Maker00013639, Maker00015271 ... Maker00016995, Maker00017393
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-10724, nbisL1-mrna-1204, nbisL1-mrna-14179 ... nbisL1-mrna-4682, nbisL1-mrna-6073
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-14160, nbisL1-mrna-21074, nbisL1-mrna-23302 ... nbisL1-mrna-23407, nbisL1-mrna-4698
Salicaceae	Populus euphratica	5	populus_peu08828, populus_peu10402, populus_peu18434 ... populus_peu26991, populus_peu36528
Solanaceae	Lycium barbarum	4	gene-LOC132599207, gene-LOC132617721, gene-LOC132623439 ... gene-LOC132640783
Solanaceae	Solanum chilense	3	SOLCI004063100, SOLCI006162000, SOLCI007336500
Solanaceae	Solanum pennellii	4	gene-LOC107005258, gene-LOC107010512, gene-LOC107020408 ... gene-LOC107025350
Tamaricaceae	Reaumuria soongarica	6	MSTRG.17253_chr09_+, gene_14645, gene_1628, gene_17785 ... gene_435, gene_8752
Tamaricaceae	Tamarix chinensis	4	TC01G2338, TC08G0141, TC10G0430, TC12G1005
Zosteraceae	Zostera marina	2	Zosma03g04440.v3.1, Zosma03g27290.v3.1