Basic Information
Locus ID:
nbisL1-mrna-3538
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 52220765 | 52223177 | + | nbisL1-mrna-3538 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 56,654.03 Da | 36.29 | 92.80 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 46 | 365 | 1.5E-74 | IPR000490 |
| Pfam | PF07983 | X8 domain | 383 | 454 | 7.0E-21 | IPR012946 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 46 | 365 | 1.51E-80 | IPR017853 |
| Gene3D | G3DSA:1.20.58.1040 | - | 376 | 494 | 6.6E-12 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 45 | 372 | 3.8E-108 | - |
| SMART | SM00768 | X8_cls | 382 | 467 | 3.1E-48 | IPR012946 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 280 | 293 | - | IPR000490 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11820.2 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_021294854.1 | glucan endo-1,3-beta-glucosidase 1 [Herrania umbratica] | 0 |
| O65399 | Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g11820 PE=2 SV=3 | 0 | |
| TrEMBL | A0A6J1B8L2 | glucan endo-1,3-beta-D-glucosidase OS=Herrania umbratica OX=108875 GN=LOC110424582 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology