Basic Information
Locus ID:
nbisL1-mrna-3534
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Short Name:
UBC5
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 4620510 | 4623631 | + | nbisL1-mrna-3534 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.22 | 19,840.95 Da | 46.56 | 68.85 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 1 | 133 | 8.82132E-51 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 3 | 133 | 5.1E-39 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 3 | 139 | 9.5E-45 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 151 | 3.6E-48 | IPR016135 |
| SMART | SM00212 | ubc_7 | 1 | 139 | 1.2E-46 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 139 | 43.395199 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 64 | 80 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 174 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63800.1 | ubiquitin-conjugating enzyme 5. | 0 |
| RefSeq | XP_002298025.1 | ubiquitin-conjugating enzyme E2 4 [Populus trichocarpa] | 0 |
| P42749 | Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2L3U7 | Ubiquitin-conjugating enzyme E2-21 kDa 3 family protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology