Basic Information
Locus ID:
nbisL1-mrna-3512
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Cell division cycle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 7338090 | 7340674 | + | nbisL1-mrna-3512 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 50,545.02 Da | 47.55 | 75.11 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 161 | 430 | 4.19158E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 259 | 294 | 1.2E-6 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 178 | 235 | 2.6E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 307 | 345 | 0.0041 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 395 | 430 | 8.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 142 | 430 | 2.75E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 85 | 433 | 1.8E-126 | IPR015943 |
| SMART | SM00320 | WD40_4 | 391 | 430 | 6.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 125 | 166 | 490.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 171 | 210 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 303 | 345 | 8.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 255 | 294 | 1.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 213 | 251 | 0.44 | IPR001680 |
| SMART | SM00320 | WD40_4 | 348 | 388 | 410.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 178 | 219 | 11.711506 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 398 | 431 | 10.416506 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 262 | 294 | 11.523771 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 262 | 294 | 13.917108 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 398 | 431 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 178 | 210 | 8.992876 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 417 | 431 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_021621334.1 | cell division cycle 20.1, cofactor of APC complex [Manihot esculenta] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9VIE8 | ANAPC4_WD40 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_08G164600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology