Basic Information
Locus ID:
nbisL1-mrna-3509
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
elicitor-responsive protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 4877695 | 4880669 | - | nbisL1-mrna-3509 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.66 | 26,252.81 Da | 45.05 | 92.14 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 163 | 223 | 1.12E-7 | IPR035892 |
| SUPERFAMILY | SSF57850 | RING/U-box | 116 | 143 | 4.86E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 73 | 153 | 1.3E-7 | IPR013083 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 154 | 223 | 6.4E-11 | IPR035892 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63220.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_052294142.1 | elicitor-responsive protein 3-like isoform X4 [Citrus sinensis] | 0 |
| Q25AG5 | Elicitor-responsive protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=ERG3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LDG7 | Uncharacterized protein MANES_02G025000 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22426 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3509 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6660 |