Basic Information
Locus ID:
nbisL1-mrna-3444
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Mitogen-activated protein kinase kinase kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000014F_pilon | 1673784 | 1674354 | + | nbisL1-mrna-3444 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.78 | 21,310.77 Da | 30.82 | 83.64 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 3 | 184 | 5.6E-24 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 3 | 184 | 2.83E-33 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 71 | 1.7E-7 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 73 | 184 | 1.0E-20 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 3 | 184 | 21.98333 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 9 | 31 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G05060.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_018841314.1 | mitogen-activated protein kinase kinase kinase 17-like [Juglans regia] | 0 |
| P83099 | Putative protein kinase C delta type homolog OS=Drosophila melanogaster OX=7227 GN=Pkcdelta PE=2 SV=3 | 0 | |
| TrEMBL | A0A5C7IJG5 | Protein kinase domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_004154 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 9 | AT2G05060.1, AT2G34290.1, AT2G41910.1, AT2G41920.1 ... |
| Brassicaceae | Eutrema salsugineum | 17 | Thhalv10000714m.g.v1.0, Thhalv10012027m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 8 | Sp1g33950.v2.2, Sp2g03310.v2.2, Sp4g12780.v2.2 ... |
| Brassicaceae | Brassica nigra | 17 | BniB01g003760.2N, BniB06g001160.2N, BniB06g001430.2N ... |
| Casuarinaceae | Casuarina glauca | 2 | Cgl09G0332, Cgl09G0845 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.2093 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13161 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3444 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000016l.86 |