Basic Information
Locus ID:
nbisL1-mrna-3443
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
F-box kelch-repeat protein At1g57790-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 6646421 | 6654051 | + | nbisL1-mrna-3443 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 96,736.79 Da | 50.38 | 84.37 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 438 | 474 | 0.0015 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 430 | 475 | 1.83E-5 | IPR036047 |
| SMART | SM00256 | fbox_2 | 442 | 481 | 1.5 | IPR001810 |
| SMART | SM00256 | fbox_2 | 128 | 167 | 0.021 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 436 | 484 | 9.92138 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 122 | 170 | 8.941087 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021678710.1 | F-box protein At1g49360-like [Hevea brasiliensis] | 0 |
| TrEMBL | A0A6A6LGF0 | F-box domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_008496 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 2 | pistato.v30086450, pistato.v30086460 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.2385, evm.TU.LG04.1827 |
| Rhizophoraceae | Bruguiera sexangula | 8 | evm.TU.Scaffold_1_RagTag.171, evm.TU.Scaffold_1_RagTag.177 ... |
| Rhizophoraceae | Carallia pectinifolia | 9 | nbisL1-mrna-3224, nbisL1-mrna-3384, nbisL1-mrna-3441 ... |
| Rhizophoraceae | Ceriops tagal | 5 | nbisL1-mrna-19350, nbisL1-mrna-45, nbisL1-mrna-5667 ... |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-13717, nbisL1-mrna-13755, nbisL1-mrna-5245 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000009l.27, add.evm.TU.utg000012l.42 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-19896, nbisL1-mrna-19897, nbisL1-mrna-21967 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-158 |