Basic Information
Locus ID:
nbisL1-mrna-3427
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
disease resistance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 6470800 | 6498256 | - | nbisL1-mrna-3427 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 185,213.52 Da | 47.07 | 102.86 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16211 | C-terminus of histone H2A | 1579 | 1612 | 1.7E-15 | IPR032454 |
| SUPERFAMILY | SSF52047 | RNI-like | 129 | 349 | 1.8E-13 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 318 | 638 | 3.92E-16 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 1259 | 1508 | 6.2E-13 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 750 | 993 | 2.43E-18 | - |
| SUPERFAMILY | SSF47113 | Histone-fold | 1548 | 1610 | 3.07E-16 | IPR009072 |
| SUPERFAMILY | SSF52047 | RNI-like | 1009 | 1225 | 1.18E-11 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 835 | 1011 | 1.1E-11 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 361 | 645 | 2.1E-17 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 647 | 826 | 3.2E-14 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1254 | 1523 | 1.6E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1013 | 1253 | 8.1E-6 | IPR032675 |
| Gene3D | G3DSA:1.10.20.10 | Histone, subunit A | 1524 | 1614 | 6.2E-27 | IPR009072 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 87 | 360 | 1.4E-12 | IPR032675 |
| SMART | SM00414 | h2a4 | 1499 | 1610 | 7.1E-19 | IPR002119 |
| PRINTS | PR00620 | Histone H2A signature | 1587 | 1605 | 3.0E-18 | IPR002119 |
| PRINTS | PR00620 | Histone H2A signature | 1559 | 1573 | 3.0E-18 | IPR002119 |
| PRINTS | PR00620 | Histone H2A signature | 1545 | 1558 | 3.0E-18 | IPR002119 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08880.1 | Histone superfamily protein. Encodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 1020 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin. | 0 |
| RefSeq | XP_043808118.1 | uncharacterized protein LOC110607877 [Manihot esculenta] | 0 |
| O65759 | Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1 | 0 | |
| TrEMBL | B9REY6 | Phosphoprotein phosphatase, putative OS=Ricinus communis OX=3988 GN=RCOM_1429720 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology