Basic Information
Locus ID:
nbisL1-mrna-3425
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
disease resistance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 6422343 | 6436948 | - | nbisL1-mrna-3425 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 186,782.94 Da | 47.75 | 98.95 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16211 | C-terminus of histone H2A | 1599 | 1632 | 9.5E-14 | IPR032454 |
| SUPERFAMILY | SSF47113 | Histone-fold | 1568 | 1627 | 9.94E-13 | IPR009072 |
| SUPERFAMILY | SSF52047 | RNI-like | 1267 | 1501 | 2.2E-12 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 353 | 607 | 3.33E-9 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 722 | 994 | 6.51E-22 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 11 | 317 | 2.01E-13 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 549 | 704 | 8.63E-10 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 872 | 1245 | 3.23E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 617 | 791 | 4.2E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 85 | 328 | 4.4E-9 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1243 | 1531 | 1.6E-18 | IPR032675 |
| Gene3D | G3DSA:1.10.20.10 | Histone, subunit A | 1564 | 1634 | 9.1E-24 | IPR009072 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 855 | 1005 | 1.1E-9 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 333 | 609 | 1.6E-11 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1006 | 1242 | 1.1E-11 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 84 | 1.1E-5 | IPR032675 |
| SMART | SM00414 | h2a4 | 1507 | 1630 | 2.8E-13 | IPR002119 |
| PRINTS | PR00620 | Histone H2A signature | 1607 | 1625 | 3.6E-14 | IPR002119 |
| PRINTS | PR00620 | Histone H2A signature | 1565 | 1578 | 3.6E-14 | IPR002119 |
| PRINTS | PR00620 | Histone H2A signature | 1579 | 1593 | 3.6E-14 | IPR002119 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08880.1 | Histone superfamily protein. Encodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 1020 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin. | 0 |
| RefSeq | XP_043808117.1 | uncharacterized protein LOC110609176 isoform X5 [Manihot esculenta] | 0 |
| O65759 | Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1 | 0 | |
| TrEMBL | B9REY6 | Phosphoprotein phosphatase, putative OS=Ricinus communis OX=3988 GN=RCOM_1429720 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology