Basic Information
Locus ID:
nbisL1-mrna-3424
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
disease resistance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 6383018 | 6392748 | - | nbisL1-mrna-3424 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 157,880.77 Da | 42.59 | 100.38 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 168 | 282 | 7.7E-18 | IPR002182 |
| Pfam | PF00931 | NB-ARC domain | 301 | 398 | 2.7E-11 | IPR002182 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 154 | 424 | 7.16E-44 | IPR027417 |
| SUPERFAMILY | SSF52047 | RNI-like | 1115 | 1328 | 1.41E-11 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 484 | 1091 | 5.1E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 681 | 900 | 1.3E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 901 | 1098 | 1.1E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 466 | 680 | 3.0E-24 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1099 | 1354 | 1.1E-10 | IPR032675 |
| Gene3D | G3DSA:1.10.8.430 | - | 331 | 413 | 7.1E-17 | IPR042197 |
| Gene3D | G3DSA:3.40.50.300 | - | 149 | 325 | 5.7E-27 | IPR027417 |
| PRINTS | PR00364 | Disease resistance protein signature | 179 | 194 | 1.4E-20 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 252 | 266 | 1.4E-20 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 364 | 378 | 1.4E-20 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 631 | 647 | 1.4E-20 | - |
| Coils | Coil | Coil | 35 | 62 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27190.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_015576964.2 | - | 0 |
| Q9T048 | Disease resistance protein At4g27190 OS=Arabidopsis thaliana OX=3702 GN=At4g27190 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MMH8 | Putative disease resistance protein At4g27220 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology