Basic Information
Locus ID:
nbisL1-mrna-3412
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
disease resistance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 6114155 | 6134655 | - | nbisL1-mrna-3412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 391,034.91 Da | 51.14 | 101.39 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 611 | 880 | 2.67E-22 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 1519 | 1789 | 9.42E-23 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 16 | 204 | 2.67E-11 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 2344 | 2719 | 4.47E-15 | - |
| SUPERFAMILY | SSF47113 | Histone-fold | 3279 | 3331 | 2.3E-11 | IPR009072 |
| SUPERFAMILY | SSF52047 | RNI-like | 1029 | 1332 | 3.88E-16 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 237 | 492 | 2.04E-11 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 1752 | 2031 | 1.41E-12 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 2590 | 2973 | 1.87E-17 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 1994 | 2240 | 2.04E-11 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 2995 | 3244 | 4.24E-10 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 1285 | 1504 | 2.79E-13 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2994 | 3258 | 1.9E-11 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1507 | 1655 | 4.0E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1128 | 1413 | 5.4E-14 | IPR032675 |
| Gene3D | G3DSA:1.10.20.10 | Histone, subunit A | 3276 | 3336 | 1.5E-17 | IPR009072 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2335 | 2517 | 4.6E-11 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2523 | 2725 | 2.6E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 507 | 747 | 5.8E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 895 | 1121 | 1.6E-5 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 227 | 493 | 3.3E-7 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1802 | 2050 | 2.3E-9 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 10 | 226 | 5.1E-10 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2736 | 2984 | 3.6E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2062 | 2320 | 1.5E-10 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1656 | 1801 | 1.1E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 756 | 894 | 8.3E-11 | IPR032675 |
| SMART | SM00414 | h2a4 | 3237 | 3338 | 1.9E-4 | IPR002119 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08880.1 | Histone superfamily protein. Encodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 1020 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin. | 0 |
| RefSeq | XP_017977192.1 | - | 0 |
| P35063 | Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1 | 0 | |
| TrEMBL | B9REY6 | Phosphoprotein phosphatase, putative OS=Ricinus communis OX=3988 GN=RCOM_1429720 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology