Basic Information
Locus ID:
nbisL1-mrna-34
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 306820 | 308713 | + | nbisL1-mrna-34 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 23,078.51 Da | 41.05 | 67.19 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06921 | ChtBD1_GH19_hevein | 27 | 64 | 9.57759E-18 | - |
| CDD | cd00325 | chitinase_GH19 | 79 | 198 | 4.9794E-39 | - |
| Pfam | PF00182 | Chitinase class I | 78 | 143 | 2.5E-31 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 27 | 64 | 2.5E-13 | IPR001002 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 27 | 66 | 2.88E-11 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 75 | 205 | 1.12E-42 | IPR023346 |
| Gene3D | G3DSA:3.30.60.10 | - | 25 | 67 | 6.1E-15 | IPR036861 |
| Gene3D | G3DSA:1.10.530.10 | - | 68 | 143 | 3.2E-32 | - |
| Gene3D | G3DSA:1.10.530.10 | - | 144 | 204 | 2.7E-22 | - |
| SMART | SM00270 | ChitinBD_3 | 27 | 64 | 5.9E-15 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 3 | 150 | 1.7E-46 | IPR016283 |
| PIRSF | PIRSF001060 | Endochitinase | 143 | 205 | 1.2E-18 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 25 | 66 | 10.557654 | IPR001002 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 96 | 118 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 35 | 43 | 9.0E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 43 | 50 | 9.0E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 50 | 57 | 9.0E-6 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_021685895.1 | - | 0 |
| Q8GUD7 | Probable inactive chitinase-like protein LaCIC (Fragment) OS=Hevea brasiliensis OX=3981 GN=LACIC PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LEU5 | Uncharacterized protein MANES_11G106100 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology