Basic Information
Locus ID:
nbisL1-mrna-3391
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002179F_pilon | 3173385 | 3177367 | - | nbisL1-mrna-3391 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 48,333.39 Da | 56.42 | 90.52 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 238 | 285 | 6.79824E-14 | - |
| Pfam | PF12906 | RING-variant domain | 238 | 284 | 1.3E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 234 | 288 | 4.02E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 224 | 293 | 6.8E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 237 | 285 | 5.3E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 230 | 291 | 20.864481 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034898744.1 | uncharacterized protein LOC118036980 isoform X2 [Populus alba] | 0 |
| TrEMBL | A0A2P2JWT3 | Uncharacterized protein LOC8262371 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology