Basic Information
Locus ID:
nbisL1-mrna-3388
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 6233928 | 6270324 | - | nbisL1-mrna-3388 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 488,874.47 Da | 42.44 | 90.02 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 374 | 1.9E-66 | IPR031646 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 109 | 3.0E-31 | IPR026854 |
| Pfam | PF06398 | Integral peroxisomal membrane peroxin | 2890 | 2975 | 1.1E-6 | IPR010482 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 564 | 785 | 3.3E-33 | IPR031642 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1991 | 2154 | 1.2E-11 | IPR009291 |
| Pfam | PF00169 | PH domain | 807 | 915 | 1.1E-6 | IPR001849 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3334 | 3499 | 2.6E-11 | IPR009543 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2225 | 2372 | 2.0E-12 | IPR009291 |
| SUPERFAMILY | SSF50729 | PH domain-like | 802 | 917 | 6.5E-7 | - |
| SMART | SM00233 | PH_update | 805 | 918 | 7.0E-4 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 813 | 916 | 7.7173 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4339 | 4362 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_021649531.1 | uncharacterized protein LOC110641940 isoform X2 [Hevea brasiliensis] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MGV9 | PH domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology