Basic Information
Locus ID:
nbisL1-mrna-3366
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 49844478 | 49858127 | - | nbisL1-mrna-3366 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.51 | 39,910.92 Da | 42.26 | 75.16 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.42209E-25 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 143 | 192 | 1.45517E-30 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.3E-13 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 149 | 187 | 2.4E-14 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 243 | 298 | 8.8E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 324 | 359 | 1.3E-9 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 133 | 193 | 2.71E-11 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 304 | 365 | 5.59E-14 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 242 | 306 | 3.27E-21 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 83 | 1.93E-20 | IPR029071 |
| Gene3D | G3DSA:1.10.10.540 | - | 235 | 299 | 4.7E-25 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 8.9E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 142 | 192 | 1.1E-20 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 315 | 363 | 8.2E-23 | - |
| SMART | SM00727 | CBM | 241 | 284 | 7.1E-4 | IPR006636 |
| SMART | SM00165 | uba_6 | 149 | 189 | 4.7E-5 | IPR015940 |
| SMART | SM00165 | uba_6 | 324 | 361 | 5.2E-7 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.5E-19 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 367 | 1.1E-123 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 147 | 190 | 12.787865 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 17.60462 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 322 | 362 | 14.595147 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 350 | 365 | 2.3E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 318 | 334 | 2.3E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 269 | 291 | 2.3E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 335 | 349 | 2.3E-30 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 130 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_039070764.1 | ubiquitin receptor RAD23b-like [Hibiscus syriacus] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A5B6W8C6 | Ubiquitin receptor RAD23 OS=Gossypium australe OX=47621 GN=EPI10_011912 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology