Basic Information
Locus ID:
nbisL1-mrna-3365
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| 002179F_pilon | 2962467 | 2968463 | + | nbisL1-mrna-3365 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 68,646.02 Da | 31.74 | 81.58 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 409 | 597 | 2.09882E-48 | - |
| CDD | cd10316 | RGL4_M | 317 | 395 | 2.31215E-20 | IPR029413 |
| CDD | cd10320 | RGL4_N | 34 | 324 | 2.16639E-67 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 19 | 124 | 1.2E-22 | IPR010325 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 148 | 233 | 4.8E-40 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 407 | 596 | 3.4E-49 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 333 | 393 | 2.0E-19 | IPR029413 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 37 | 324 | 1.73E-11 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 341 | 396 | 1.86E-8 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 404 | 597 | 4.04E-44 | IPR008979 |
| Gene3D | G3DSA:2.70.98.10 | - | 32 | 343 | 2.7E-15 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 405 | 597 | 9.1E-18 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_012081708.1 | probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas] | 0 |
| TrEMBL | A0A067K103 | rhamnogalacturonan endolyase OS=Jatropha curcas OX=180498 GN=JCGZ_18737 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology