Basic Information
Locus ID:
nbisL1-mrna-3360
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
strubbelig-receptor family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 49785206 | 49790763 | - | nbisL1-mrna-3360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 74,569.88 Da | 45.46 | 84.50 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 380 | 651 | 1.05318E-88 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 4 | 32 | 2.9E-6 | IPR013210 |
| Pfam | PF13516 | Leucine Rich repeat | 57 | 72 | 0.66 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 81 | 140 | 2.9E-9 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 376 | 648 | 5.6E-43 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 357 | 648 | 1.78E-71 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 6 | 195 | 6.19E-41 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 453 | 675 | 1.1E-55 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2 | 216 | 5.7E-50 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 338 | 451 | 2.5E-27 | - |
| SMART | SM00369 | LRR_typ_2 | 103 | 126 | 7.1 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 57 | 81 | 3.1 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 127 | 150 | 13.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 59 | 81 | 7.072797 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 374 | 651 | 36.301071 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 380 | 403 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 60 | 73 | 1.2E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 127 | 140 | 1.2E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 675 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 683 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_052488865.1 | protein STRUBBELIG-RECEPTOR FAMILY 6-like [Gossypium raimondii] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5D2UKT8 | Protein kinase domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D06G175400v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology