Basic Information
Locus ID:
nbisL1-mrna-3360
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 5650582 | 5653687 | - | nbisL1-mrna-3360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 27,489.96 Da | 35.31 | 66.59 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 20 | 246 | 2.4E-86 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 134 | 236 | 9.12E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 133 | 249 | 1.9E-43 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 137 | 237 | 24.628048 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 53 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_034908070.1 | auxin-responsive protein IAA16 [Populus alba] | 0 |
| O24407 | Auxin-responsive protein IAA16 OS=Arabidopsis thaliana OX=3702 GN=IAA16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JUW0 | Auxin-responsive protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology