Basic Information
Locus ID:
nbisL1-mrna-3358
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
MND1-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 6723055 | 6726198 | - | nbisL1-mrna-3358 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 79,841.95 Da | 47.55 | 77.77 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 656 | 704 | 5.6E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 642 | 705 | 3.83E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 644 | 710 | 7.5E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 659 | 698 | 0.0015 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 659 | 699 | 10.836942 | IPR001841 |
| Coils | Coil | Coil | 440 | 481 | - | - |
| Coils | Coil | Coil | 503 | 579 | - | - |
| Coils | Coil | Coil | 366 | 386 | - | - |
| Coils | Coil | Coil | 581 | 615 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35330.2 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021649792.1 | MND1-interacting protein 1 [Hevea brasiliensis] | 0 |
| Q8RX22 | MND1-interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=MIP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L6P3 | Synaptonemal complex protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23450, jg37122 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14994 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004219 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g106510 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg24436, Sbi_jg24444, Sbi_jg8289 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11746 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001633 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51396, Sgl56639 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006454, gene:ENSEOMG00000023664 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0002930, CQ.Regalona.r1.5BG0003050 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30029070, pistato.v30029170 |
| Apiaceae | Apium graveolens | 2 | Ag11G03843, Ag6G00775 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G008270, COCNU_09G003500 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706383, gene-LOC103714071 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.160.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G03971 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G32530.1, AT2G35330.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10006944m.g.v1.0, Thhalv10010162m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g28370.v2.2, Sp4g17530.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g035680.2N, BniB04g049040.2N, BniB06g008600.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq01G0453, Ceq01G0455, Ceq05G0964 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G0481, Cgl05G0963 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g08650, gene.Cymno03g07890 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g05190 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-11363, nbisL1-mrna-11364, nbisL1-mrna-1536 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.720 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00030405 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14564 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1732, BH03.1896, CH03.2073 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0533690, gene-QOZ80_6BG0486750 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0477040.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_004815 |
| Poaceae | Oryza coarctata | 2 | Oco17G003570, Oco18G003590 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g20550.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G167200 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G011070, Chr14G013000, Chr21G012080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G328800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG031730, gene_TRIDC5BG033400 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G189000.1, TraesCS5B02G194700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb311380_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19919 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32495 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3086, evm.TU.LG10.782, evm.TU.LG16.463 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g19630 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.458 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22711 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2934 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20093 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.220 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014447 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3358 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6430 |
| Salicaceae | Populus euphratica | 2 | populus_peu03151, populus_peu34016 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609740 |
| Solanaceae | Solanum chilense | 1 | SOLCI005151400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107027377, gene-LOC107028637 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.23768_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2813 |
| Zosteraceae | Zostera marina | 1 | Zosma06g20070.v3.1 |