Basic Information
Locus ID:
nbisL1-mrna-3351
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002179F_pilon | 2849194 | 2853512 | - | nbisL1-mrna-3351 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.58 | 44,365.64 Da | 48.56 | 70.57 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 69 | 363 | 1.4E-79 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 256 | 354 | 1.47E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 256 | 367 | 6.6E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 258 | 355 | 25.201059 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65670.2 | indole-3-acetic acid inducible 9. auxin (indole-3-acetic acid) induced gene | 0 |
| RefSeq | XP_012079519.1 | auxin-responsive protein IAA9 [Jatropha curcas] | 0 |
| Q38827 | Auxin-responsive protein IAA9 OS=Arabidopsis thaliana OX=3702 GN=IAA9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067K7E1 | Auxin-responsive protein OS=Jatropha curcas OX=180498 GN=JCGZ_12617 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology