Basic Information
Locus ID:
nbisL1-mrna-335
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
DA1-related 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 2805372 | 2809024 | + | nbisL1-mrna-335 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 55,426.63 Da | 61.96 | 66.65 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 134 | 186 | 8.32899E-31 | - |
| Pfam | PF12315 | Protein DA1 | 311 | 481 | 3.0E-75 | IPR022087 |
| Pfam | PF00412 | LIM domain | 134 | 189 | 5.7E-11 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 126 | 159 | 1.27E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 160 | 216 | 6.02E-9 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 128 | 192 | 1.7E-15 | - |
| SMART | SM00726 | uim | 94 | 113 | 0.11 | IPR003903 |
| SMART | SM00132 | lim_4 | 133 | 185 | 2.6E-14 | IPR001781 |
| SMART | SM00726 | uim | 40 | 59 | 10.0 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 94 | 113 | 10.218639 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 132 | 192 | 12.2563 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 134 | 168 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 433 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 82 | - | - |
| Coils | Coil | Coil | 86 | 106 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_021630216.1 | protein DA1-related 1 isoform X2 [Manihot esculenta] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2P2JXU8 | Uncharacterized protein MANES_12G102600 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology