Basic Information
Locus ID:
nbisL1-mrna-3340
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 49471897 | 49475637 | - | nbisL1-mrna-3340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 79,819.26 Da | 49.53 | 88.01 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 7 | 149 | 1.41495E-32 | - |
| Pfam | PF00582 | Universal stress protein family | 10 | 122 | 3.6E-5 | IPR006016 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 427 | 681 | 1.4E-41 | IPR001245 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 10 | 125 | 2.6E-10 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 407 | 681 | 4.45E-69 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 392 | 496 | 3.7E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 497 | 704 | 1.5E-50 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 9 | 147 | 6.5E-8 | IPR014729 |
| SMART | SM00220 | serkin_6 | 424 | 685 | 6.2E-24 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 424 | 685 | 35.057278 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 542 | 554 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 259 | - | - |
| Coils | Coil | Coil | 297 | 317 | - | - |
| Coils | Coil | Coil | 328 | 372 | - | - |
| Coils | Coil | Coil | 376 | 396 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12000.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_052485252.1 | U-box domain-containing protein 34 [Gossypium raimondii] | 0 |
| Q8S8S7 | U-box domain-containing protein 34 OS=Arabidopsis thaliana OX=3702 GN=PUB34 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5B6V6C9 | U-box domain-containing protein 34-like OS=Gossypium australe OX=47621 GN=EPI10_008852 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology