Basic Information
Locus ID:
nbisL1-mrna-3338
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 49439381 | 49441397 | - | nbisL1-mrna-3338 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 48,374.96 Da | 43.80 | 96.04 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 264 | 394 | 2.9845E-60 | - |
| CDD | cd17939 | DEADc_EIF4A | 55 | 253 | 9.94074E-133 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 277 | 385 | 5.5E-29 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 76 | 237 | 7.6E-39 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 120 | 405 | 4.63E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 41 | 259 | 3.3E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 260 | 424 | 2.2E-58 | IPR027417 |
| SMART | SM00487 | ultradead3 | 70 | 267 | 1.1E-55 | IPR014001 |
| SMART | SM00490 | helicmild6 | 304 | 385 | 2.4E-31 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 82 | 252 | 28.428173 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 263 | 424 | 25.631367 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 51 | 79 | 10.273145 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 198 | 206 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_039041112.1 | eukaryotic initiation factor 4A-14 [Hibiscus syriacus] | 0 |
| Q40467 | Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5D2CJN1 | Eukaryotic initiation factor 4A-11 OS=Gossypium darwinii OX=34276 GN=ES288_A05G145400v1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology