Basic Information
Locus ID:
nbisL1-mrna-3326
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
lysM domain receptor-like kinase 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 5396310 | 5398418 | + | nbisL1-mrna-3326 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.84 | 76,783.26 Da | 49.20 | 87.72 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 223 | 260 | 2.10195E-5 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 414 | 673 | 2.8E-37 | IPR000719 |
| Pfam | PF01476 | LysM domain | 224 | 267 | 8.5E-5 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 370 | 673 | 1.04E-60 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 463 | 693 | 2.6E-49 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 222 | 276 | 5.9E-7 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 372 | 462 | 1.8E-14 | - |
| SMART | SM00257 | LysM_2 | 223 | 267 | 8.6E-6 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 222 | 266 | 10.337522 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 358 | 680 | 30.590935 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_002307830.3 | protein LYK5 [Populus trichocarpa] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | B9H5Z0 | Protein LYK5-like OS=Populus trichocarpa OX=3694 GN=POPTR_005G259600 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology