Basic Information
Locus ID:
nbisL1-mrna-3323
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
SH3 domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000014F_pilon | 1031827 | 1035237 | - | nbisL1-mrna-3323 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 41,237.34 Da | 39.25 | 79.46 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 309 | 357 | 2.0E-9 | IPR001452 |
| SUPERFAMILY | SSF50044 | SH3-domain | 299 | 362 | 1.44E-15 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 47 | 258 | 1.02E-22 | IPR027267 |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 45 | 268 | 2.7E-9 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 291 | 368 | 2.9E-14 | - |
| SMART | SM00326 | SH3_2 | 305 | 360 | 9.6E-12 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 302 | 361 | 18.521872 | IPR001452 |
| Coils | Coil | Coil | 186 | 213 | - | - |
| Coils | Coil | Coil | 149 | 169 | - | - |
| Coils | Coil | Coil | 220 | 240 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_021609219.1 | SH3 domain-containing protein 2 [Manihot esculenta] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LXP6 | Clathrin binding protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology