Basic Information
Locus ID:
nbisL1-mrna-3317
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000014F_pilon | 980472 | 985852 | - | nbisL1-mrna-3317 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 120,132.22 Da | 37.77 | 94.35 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04053 | Coatomer WD associated region | 207 | 629 | 3.4E-125 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 60 | 93 | 4.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 103 | 138 | 2.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 2 | 25 | 0.012 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 676 | 1079 | 1.6E-163 | IPR010714 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 429 | 7.16E-34 | IPR036322 |
| SUPERFAMILY | SSF75011 | 3-carboxy-cis,cis-mucoante lactonizing enzyme | 228 | 450 | 4.45E-6 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 181 | 6.0E-62 | IPR015943 |
| Gene3D | G3DSA:1.25.40.470 | - | 501 | 673 | 6.0E-61 | - |
| SMART | SM00320 | WD40_4 | 99 | 138 | 1.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 141 | 179 | 320.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 55 | 94 | 2.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1 | 25 | 70.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 62 | 103 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 106 | 147 | 15.621435 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1 | 26 | 12.17936 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 106 | 139 | 11.919224 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1 | 26 | 10.15287 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 62 | 96 | 10.601049 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 12 | 26 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 125 | 139 | 1.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 12 | 26 | 1.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 81 | 95 | 1.9E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 729 | 756 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_012067197.1 | coatomer subunit alpha-1 [Jatropha curcas] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8T1QGG6 | Coatomer subunit alpha OS=Carya illinoinensis OX=32201 GN=CIPAW_05G071600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology