Basic Information
Locus ID:
nbisL1-mrna-3313
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
lysM domain receptor-like kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 48929878 | 48936002 | - | nbisL1-mrna-3313 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 73,734.53 Da | 36.05 | 91.91 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 158 | 201 | 1.47946E-7 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 364 | 641 | 6.7E-50 | IPR001245 |
| Pfam | PF01476 | LysM domain | 159 | 196 | 3.1E-6 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 343 | 641 | 5.8E-77 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 157 | 202 | 8.37E-7 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 433 | 657 | 3.5E-57 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 154 | 208 | 2.4E-8 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 334 | 431 | 4.0E-26 | - |
| SMART | SM00220 | serkin_6 | 360 | 646 | 2.0E-35 | IPR000719 |
| SMART | SM00257 | LysM_2 | 158 | 202 | 6.6E-6 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 360 | 647 | 38.350502 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 157 | 201 | 13.589233 | IPR018392 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 366 | 387 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 479 | 491 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51940.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_039059872.1 | lysM domain receptor-like kinase 3 [Hibiscus syriacus] | 0 |
| F4IB81 | LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana OX=3702 GN=LYK3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A3D1M0 | LysM domain receptor-like kinase 3 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000340pilonHSYRG00911 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25288 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26099 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011021 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11302, Sbi_jg46261 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20599 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005374 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl44480, Sgl49235, Sgl56266, Sgl61775 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016305, gene:ENSEOMG00000040023 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0012210, CQ.Regalona.r1.9BG0010230 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30123190 |
| Apiaceae | Apium graveolens | 1 | Ag6G01439 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G004300 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721889 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2689.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G02090, Ftri1G19919 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G51940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011293m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g38580.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g057930.2N, BniB07g004030.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0354 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0370 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g11910 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g24940 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3313 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.272 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00015345, Pov_00025749 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G15538 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.3130, AH02.3131, BH02.3199, CH02.3322 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0032610, gene-QOZ80_1BG0082800 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0287750.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055331 |
| Poaceae | Oryza coarctata | 2 | Oco01G019560, Oco02G020300 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g53840.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G270900 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0602250, Pt_Chr0602290, Pt_Chr0603808, Pt_Ctg00413 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr03G015750, Chr05G023320, Chr08G015870 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G456600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG041100, gene_TRIDC3BG046350 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G276600.2, TraesCS3B02G310800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb153700_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-12865, nbis-gene-12866 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8619 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1649, evm.TU.LG15.1613 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g21980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.597 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-27832 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15372 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7992 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.108 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018773 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7390 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21356 |
| Salicaceae | Populus euphratica | 1 | populus_peu02683 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633418 |
| Solanaceae | Solanum chilense | 1 | SOLCI006087900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015366 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10060 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1918 |
| Zosteraceae | Zostera marina | 1 | Zosma05g25330.v3.1 |