Basic Information
Locus ID:
nbisL1-mrna-3312
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 1641594 | 1642709 | + | nbisL1-mrna-3312 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.17 | 25,539.58 Da | 46.83 | 93.36 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 186 | 229 | 4.09397E-14 | - |
| Pfam | PF13639 | Ring finger domain | 186 | 229 | 5.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 182 | 231 | 1.32E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 155 | 232 | 6.3E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 187 | 228 | 6.3E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 187 | 229 | 11.95817 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27420.1 | carbon/nitrogen insensitive 1. Encodes CNI1 (Carbon/Nitrogen Insensitive1) (also named as ATL31), a RING type ubiquitin ligase that functions in the Carbon/Nitrogen response for growth phase transition in Arabidopsis seedlings. | 0 |
| RefSeq | XP_021635993.1 | NEP1-interacting protein-like 1 [Hevea brasiliensis] | 0 |
| Q8LGA5 | E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4U5PZY5 | RING-type domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000152170 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_8_RagTag.1302, evm.TU.Scaffold_8_RagTag.1307 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5000 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15343 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.438 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003086, Maker00003506 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3312 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11155 |
| Salicaceae | Populus euphratica | 2 | populus_peu15406, populus_peu33049 |