Basic Information
Locus ID:
nbisL1-mrna-3304
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
CCR4-associated factor 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 48694898 | 48695716 | - | nbisL1-mrna-3304 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.80 | 25,376.60 Da | 28.92 | 93.06 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 109 | 172 | 1.1E-5 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 4 | 217 | 3.62E-70 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 1 | 49 | 3.7E-13 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 50 | 219 | 5.8E-61 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_016683258.1 | probable CCR4-associated factor 1 homolog 6 isoform X1 [Gossypium hirsutum] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0D2VA06 | poly(A)-specific ribonuclease OS=Gossypium raimondii OX=29730 GN=B456_010G136400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology