Basic Information
Locus ID:
nbisL1-mrna-3253
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002179F_pilon | 2182799 | 2185892 | - | nbisL1-mrna-3253 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 83,520.65 Da | 42.63 | 90.66 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 104 | 123 | 0.34 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 463 | 753 | 4.7E-27 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 69 | 1.0E-9 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 462 | 758 | 9.29E-50 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 37 | 285 | 1.75E-45 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 423 | 532 | 1.1E-14 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 195 | 2.5E-43 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 533 | 767 | 9.1E-41 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 197 | 285 | 1.2E-15 | IPR032675 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 457 | 770 | 26.025654 | IPR000719 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 150 | 163 | 5.8E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 105 | 118 | 5.8E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 434 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 648 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 442 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23300.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_021654681.1 | probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Hevea brasiliensis] | 0 |
| C0LGS3 | Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana OX=3702 GN=At4g37250 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J4QWY8 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg1112, jg28642, jg30680, jg39994 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16710, gene_26528 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah010013, Ah027611 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g127460, BVRB_9g223890 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11099, Sbi_jg13086, Sbi_jg46070, Sbi_jg52769 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg20420, Seu_jg9080 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005528, GOSA_00010174 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl33879, Sgl39251, Sgl55687, Sgl60905 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000001703, gene:ENSEOMG00000016223 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.6AG0025540, CQ.Regalona.r1.7BG0005550 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30106830, pistato.v30205700 |
| Apiaceae | Apium graveolens | 1 | Ag9G00197 |
| Arecaceae | Cocos nucifera | 2 | COCNU_11G007640, contig69653366G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714255, gene-LOC103716219 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3242.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri13G24759, Ftri15G16133, Ftri18G22951, Ftri1G04342 ... |
| Brassicaceae | Arabidopsis thaliana | 5 | AT2G15300.1, AT2G23300.1, AT4G34220.1, AT4G37250.1 ... |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000055m.g.v1.0, Thhalv10003700m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g29380.v2.2, Sp3g28580.v2.2, Sp4g02300.v2.2 ... |
| Brassicaceae | Brassica nigra | 5 | BniB01g020540.2N, BniB04g026890.2N, BniB05g001630.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G1359, Ceq09G0365 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G1364, Cgl09G0403 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g02560 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g00550 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-10056, nbisL1-mrna-10545, nbisL1-mrna-6650 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG02.2082, evm.TU.LG03.1036, evm.TU.LG08.528 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007661, Pov_00023861 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb1G06363, Lb2G13584, Lb3G17451, Lb5G27310, Lb5G27839 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.1206, AH06.2402, BH03.1395, BH06.2198, CH03.1511 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0524100, gene-QOZ80_6AG0545950 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0467840.1, HORVU.MOREX.r3.7HG0746230.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_003887, gene-QYE76_019894, gene-QYE76_036731 |
| Poaceae | Oryza coarctata | 4 | Oco11G013540, Oco12G013680, Oco17G000240, Oco18G000220 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G087500, gene-BS78_10G202300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0401633, Pt_Chr0401656, Pt_Chr0705139 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G030620, Chr05G008370, Chr10G004700, Chr10G018660 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G274800, Tel7E01G912300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG026530, gene_TRIDC5BG027720 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G160500.1, TraesCS5B02G158000.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb095660_P001, Zm00001eb307320_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-24619, nbis-gene-24620, nbis-gene-40936 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g30866, Zma_g31972, Zma_g33117 |
| Portulacaceae | Portulaca oleracea | 8 | evm.TU.LG02.1517, evm.TU.LG04.1050, evm.TU.LG05.129 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g05260 |
| Rhizophoraceae | Bruguiera sexangula | 5 | evm.TU.60424.1, evm.TU.Scaffold_1_RagTag.2068 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-17303, nbisL1-mrna-4844, nbisL1-mrna-5876 ... |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-15142, nbisL1-mrna-20892, nbisL1-mrna-7755 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-11937, nbisL1-mrna-3468, nbisL1-mrna-6109 ... |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000009l.745, evm.TU.utg000011l.1121 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00006266, Maker00007721, Maker00012450, Maker00017030 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-15478, nbisL1-mrna-2519, nbisL1-mrna-4785 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-14011, nbisL1-mrna-2194, nbisL1-mrna-3253 ... |
| Salicaceae | Populus euphratica | 3 | populus_peu01544, populus_peu14428, populus_peu23350 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598998, gene-LOC132622378 |
| Solanaceae | Solanum chilense | 2 | SOLCI004061300, SOLCI005941300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007771, gene-LOC107011791 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.11561_chr02_+, STRG.6522_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G1803, TC10G0337 |
| Zosteraceae | Zostera marina | 2 | Zosma03g23560.v3.1, Zosma05g19480.v3.1 |