Basic Information
Locus ID:
nbisL1-mrna-3247
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000014F_pilon | 476841 | 486514 | - | nbisL1-mrna-3247 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 79,731.96 Da | 42.87 | 83.53 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 625 | 729 | 6.3E-30 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 353 | 722 | 9.81E-73 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 301 | 542 | 3.4E-43 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 589 | 727 | 6.6E-27 | - |
| SMART | SM00119 | hect_3 | 372 | 729 | 6.3E-42 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 385 | 729 | 27.193977 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 58 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_024464427.1 | E3 ubiquitin-protein ligase UPL3 [Populus trichocarpa] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | B9HR64 | HECT-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_009G134300 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology