Basic Information
Locus ID:
nbisL1-mrna-3241
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
WD40 region of Ge1, enhancer of mRNA-decapping protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 2234442 | 2239770 | - | nbisL1-mrna-3241 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.25 | 48,148.76 Da | 48.03 | 87.11 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 88 | 189 | 2.09E-12 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 26 | 208 | 2.3E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 129 | 166 | 0.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 84 | 125 | 3.4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 153 | 166 | 8.737287 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13290.1 | varicose-related. | 0 |
| RefSeq | XP_016171223.2 | LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4-like [Arachis ipaensis] | 0 |
| Q9LTT9 | Varicose-related protein OS=Arabidopsis thaliana OX=3702 GN=VCR PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2J640 | Ge1_WD40 domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1418 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3241 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11254 |