Basic Information
Locus ID:
nbisL1-mrna-3239
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 47267321 | 47269552 | + | nbisL1-mrna-3239 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 35,943.33 Da | 49.20 | 67.70 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 52 | 321 | 7.3E-88 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 208 | 311 | 1.77E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 204 | 323 | 1.8E-43 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 210 | 312 | 24.564381 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 179 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_022715007.1 | auxin-responsive protein IAA27-like [Durio zibethinus] | 0 |
| Q9ZSY8 | Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P5WGP6 | Auxin-responsive protein OS=Durio zibethinus OX=66656 GN=LOC111274550 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology