Basic Information
Locus ID:
nbisL1-mrna-3230
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002179F_pilon | 2040869 | 2044195 | - | nbisL1-mrna-3230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.43 | 68,845.26 Da | 64.97 | 68.54 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 581 | 623 | 1.95519E-15 | - |
| Pfam | PF13639 | Ring finger domain | 581 | 623 | 5.0E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 576 | 625 | 4.71E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 559 | 627 | 9.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 582 | 622 | 2.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 582 | 623 | 12.120453 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 200 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G45180.2 | - | 0 |
| RefSeq | XP_015577516.1 | probable E3 ubiquitin-protein ligase HIP1 [Ricinus communis] | 0 |
| O49500 | E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7ZHV8 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_6_RagTag.1863, evm.TU.Scaffold_6_RagTag.1864 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17278 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15497 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3230 |