Basic Information
Locus ID:
nbisL1-mrna-320
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 2614318 | 2623365 | + | nbisL1-mrna-320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 92,915.90 Da | 49.99 | 60.74 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 572 | 613 | 1.73E-7 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 45 | 219 | 6.91E-6 | IPR016024 |
| Gene3D | G3DSA:2.30.30.140 | - | 561 | 621 | 5.6E-11 | - |
| SMART | SM00333 | TUDOR_7 | 570 | 629 | 0.0026 | IPR002999 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 567 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 732 | 773 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 568 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 805 | 829 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 637 | 651 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 367 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 687 | 721 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 853 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 532 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.2 | 0 | |
| RefSeq | XP_039024000.1 | rho GTPase-activating protein gacZ-like [Hibiscus syriacus] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2YT57 | Tudor domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111238pilonHSYRG00195 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology