Basic Information
Locus ID:
nbisL1-mrna-3195
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 45633660 | 45637039 | + | nbisL1-mrna-3195 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 106,368.73 Da | 34.92 | 97.76 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 319 | 556 | 4.51891E-84 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 327 | 536 | 1.4E-21 | IPR011527 |
| Pfam | PF01535 | PPR repeat | 639 | 669 | 0.018 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 864 | 885 | 0.034 | IPR002885 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 715 | 851 | 7.3E-7 | IPR033443 |
| Pfam | PF11835 | RRM-like domain | 55 | 132 | 6.9E-18 | IPR021790 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 56 | 135 | 3.39E-11 | IPR035979 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 324 | 564 | 1.44E-26 | IPR036640 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 604 | 729 | 1.2E-18 | IPR011990 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 318 | 565 | 1.2E-38 | IPR036640 |
| Gene3D | G3DSA:3.30.70.330 | - | 55 | 147 | 2.0E-21 | IPR012677 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 730 | 925 | 3.1E-27 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 818 | 850 | 9.4E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 640 | 670 | 3.4E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 814 | 848 | 9.29524 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 707 | 741 | 8.593717 | IPR002885 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 320 | 548 | 27.397274 | IPR011527 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 637 | 671 | 9.086975 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 672 | 706 | 8.571795 | IPR002885 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.2 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_040937110.1 | ABC transporter C family member 5 isoform X2 [Gossypium hirsutum] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7J8PLQ5 | ABC transporter C family member 5 OS=Gossypium raimondii OX=29730 GN=Gorai_018775 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology