Basic Information
Locus ID:
nbisL1-mrna-3194
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 45625927 | 45626580 | + | nbisL1-mrna-3194 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 22,543.09 Da | 45.07 | 58.25 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01426 | BAH domain | 38 | 117 | 5.1E-12 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 122 | 170 | 1.8E-10 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 114 | 173 | 1.24E-19 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 180 | 6.6E-20 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 37 | 116 | 5.2E-16 | IPR043151 |
| SMART | SM00249 | PHD_3 | 122 | 169 | 2.2E-10 | IPR001965 |
| SMART | SM00439 | BAH_4 | 24 | 118 | 2.5E-20 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 1 | 118 | 16.315552 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 120 | 171 | 9.1874 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 123 | 168 | - | IPR019786 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_039004146.1 | chromatin remodeling protein EBS-like [Hibiscus syriacus] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3DA96 | Chromatin remodeling protein EBS-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000132pilonHSYRG00192 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology