Basic Information
Locus ID:
nbisL1-mrna-31892
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold0097 | 94807 | 98360 | + | nbisL1-mrna-31892 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 57,003.92 Da | 44.80 | 76.54 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 322 | 416 | 1.9E-12 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 297 | 403 | 8.0E-23 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 284 | 391 | 7.4E-25 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 317 | 512 | 11.382831 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 251 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G77280.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_020535412.1 | - | 0 |
| Q9ZNQ8 | Proline-rich receptor-like protein kinase PERK4 OS=Arabidopsis thaliana OX=3702 GN=PERK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5QHM5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0856 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0937 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8921 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.182 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1319 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-31886, nbisL1-mrna-31892 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1488 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15330 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.446 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003168 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3304 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11165 |
| Salicaceae | Populus euphratica | 3 | populus_peu15376, populus_peu15377, populus_peu33029 |