Basic Information
Locus ID:
nbisL1-mrna-3149
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 3162258 | 3173901 | - | nbisL1-mrna-3149 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 119,337.65 Da | 44.26 | 87.64 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 817 | 964 | 3.42903E-53 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 365 | 963 | 1.0E-82 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 78 | 182 | 2.4E-24 | IPR006615 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 200 | 276 | 3.65E-5 | IPR029071 |
| SUPERFAMILY | SSF143791 | DUSP-like | 56 | 182 | 2.22E-27 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 363 | 963 | 1.96E-104 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 764 | 966 | 3.7E-50 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 356 | 594 | 1.3E-67 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 196 | 282 | 4.2E-13 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 48 | 195 | 1.6E-36 | - |
| SMART | SM00695 | dusp | 74 | 185 | 9.3E-30 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 365 | 976 | 51.390228 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 55 | 182 | 18.343336 | IPR006615 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 366 | 381 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 914 | 931 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_021615795.1 | ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Manihot esculenta] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2LYE8 | Ubiquitin carboxyl-terminal hydrolase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology