Basic Information
Locus ID:
nbisL1-mrna-3137
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
lysM domain receptor-like kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002179F_pilon | 1328034 | 1329992 | + | nbisL1-mrna-3137 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 71,424.37 Da | 43.10 | 94.49 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 185 | 229 | 0.00960137 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 383 | 623 | 1.2E-37 | IPR000719 |
| Pfam | PF01476 | LysM domain | 120 | 165 | 0.038 | IPR018392 |
| Pfam | PF01476 | LysM domain | 186 | 230 | 1.5E-5 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 341 | 626 | 8.99E-60 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 318 | 423 | 4.9E-14 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 425 | 643 | 9.0E-51 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 185 | 232 | 2.3E-6 | IPR036779 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 113 | 177 | 2.9E-5 | IPR036779 |
| SMART | SM00257 | LysM_2 | 119 | 165 | 0.6 | IPR018392 |
| SMART | SM00257 | LysM_2 | 185 | 230 | 0.056 | IPR018392 |
| SMART | SM00220 | serkin_6 | 368 | 626 | 1.4E-13 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 184 | 229 | 11.325649 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 118 | 164 | 8.949938 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 286 | 630 | 30.449596 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 262 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_012079103.1 | lysM domain receptor-like kinase 4 [Jatropha curcas] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067KA18 | LysM domain receptor-like kinase 4 OS=Jatropha curcas OX=180498 GN=JCGZ_12279 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology