Basic Information
Locus ID:
nbisL1-mrna-3135
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
lysM domain receptor-like kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002179F_pilon | 1322193 | 1324122 | + | nbisL1-mrna-3135 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.07 | 67,592.28 Da | 44.36 | 95.11 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12087 | TM_EGFR-like | 245 | 277 | 0.00740796 | - |
| Pfam | PF01476 | LysM domain | 186 | 218 | 0.0095 | IPR018392 |
| Pfam | PF01476 | LysM domain | 120 | 165 | 0.12 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 345 | 587 | 5.6E-38 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 302 | 590 | 9.97E-60 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 293 | 387 | 4.8E-14 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 389 | 607 | 4.0E-51 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 113 | 177 | 3.5E-5 | IPR036779 |
| SMART | SM00220 | serkin_6 | 324 | 590 | 4.5E-14 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 118 | 164 | 8.704658 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 255 | 594 | 30.760544 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_021689123.1 | lysM domain receptor-like kinase 4 [Hevea brasiliensis] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9UTJ4 | LysM domain receptor-like kinase 4 OS=Manihot esculenta OX=3983 GN=MANES_13G135000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology