Basic Information
Locus ID:
nbisL1-mrna-3134
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Cold-regulated 413 plasma membrane protein 4-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002179F_pilon | 1320600 | 1321618 | + | nbisL1-mrna-3134 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.53 | 20,679.20 Da | 35.30 | 113.48 | 0.73 |
Protein Domain:
Gene Ontology
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_012079102.1 | - | 0 |
| TrEMBL | A0A2P2JY26 | Cold-regulated 413 plasma membrane protein 4-like OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16925 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g137990 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg37768, Sbi_jg5912 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28099 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013459 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl34663 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000004056, gene:ENSEOMG00000027105 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0018190, CQ.Regalona.r1.6BG0019260 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30207330 |
| Apiaceae | Apium graveolens | 1 | Ag5G00788 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0720 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0729 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9992 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2265 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32409 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.223, evm.TU.LG25.1087 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17164 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17781 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15564 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3134 |
| Salicaceae | Populus euphratica | 1 | populus_peu23512 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3438 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0540 |