Basic Information
Locus ID:
nbisL1-mrna-3100
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 42467671 | 42477918 | - | nbisL1-mrna-3100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 205,754.25 Da | 52.57 | 86.03 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1484 | 1904 | 1.72992E-117 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1532 | 1909 | 5.5E-80 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 194 | 662 | 3.26E-41 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1476 | 1902 | 3.66E-92 | IPR035983 |
| Gene3D | G3DSA:1.25.10.10 | - | 184 | 492 | 3.6E-52 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1777 | 1907 | 1.1E-32 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1424 | 1668 | 2.0E-42 | - |
| SMART | SM00185 | arm_5 | 352 | 390 | 7.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 309 | 349 | 61.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1495 | 1909 | 1.2E-80 | IPR000569 |
| SMART | SM00185 | arm_5 | 226 | 267 | 42.0 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1606 | 1909 | 55.343304 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1059 | 1083 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1150 | 1176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1293 | 1319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 698 | 715 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1208 | 1231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 673 | 715 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 980 | 1094 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 980 | 1022 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1156 | 1175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 71 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_016720099.2 | E3 ubiquitin-protein ligase UPL3 [Gossypium hirsutum] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6V165 | HECT-type E3 ubiquitin transferase OS=Gossypium australe OX=47621 GN=EPI10_029281 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology