Basic Information
Locus ID:
nbisL1-mrna-30836
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 23457023 | 23461223 | + | nbisL1-mrna-30836 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 108,920.55 Da | 34.20 | 104.89 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 686 | 912 | 1.8E-43 | IPR000719 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 116 | 157 | 1.4E-7 | IPR025875 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 22 | 61 | 2.0E-9 | IPR013210 |
| SUPERFAMILY | SSF52047 | RNI-like | 72 | 419 | 3.37E-64 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 676 | 963 | 2.83E-74 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 358 | 607 | 2.38E-46 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 668 | 771 | 3.5E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 261 | 331 | 5.7E-18 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 188 | 260 | 9.6E-17 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 772 | 987 | 2.2E-60 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 332 | 615 | 3.8E-72 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 21 | 183 | 2.7E-45 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 284 | 308 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 91 | 115 | 16.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 684 | 986 | 1.2E-35 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 212 | 236 | 85.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 139 | 162 | 20.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 499 | 523 | 120.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 141 | 163 | 7.296117 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 572 | 594 | 7.1113 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 684 | 966 | 36.400009 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 690 | 720 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 816 | 828 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G28440.1 | HAESA-like 1. | 0 |
| RefSeq | XP_034893766.1 | receptor-like protein kinase HSL1 [Populus alba] | 0 |
| Q9SGP2 | Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana OX=3702 GN=HSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2IWX1 | Protein kinase domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology