Basic Information
Locus ID:
nbisL1-mrna-3081
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000060F_pilon | 6924514 | 6930557 | - | nbisL1-mrna-3081 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.57 | 84,240.36 Da | 51.09 | 64.94 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 378 | 507 | 1.30047E-61 | - |
| CDD | cd00201 | WW | 22 | 52 | 4.00177E-4 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 390 | 498 | 1.4E-33 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 183 | 353 | 2.4E-49 | IPR011545 |
| SUPERFAMILY | SSF51045 | WW domain | 13 | 53 | 3.94E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 231 | 515 | 6.55E-76 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 133 | 368 | 5.6E-88 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 15 | 60 | 1.1E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 369 | 540 | 7.8E-58 | IPR027417 |
| SMART | SM00456 | ww_5 | 20 | 53 | 5.6E-5 | IPR001202 |
| SMART | SM00490 | helicmild6 | 418 | 498 | 1.5E-34 | IPR001650 |
| SMART | SM00487 | ultradead3 | 178 | 381 | 3.4E-64 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 19 | 53 | 11.1126 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 190 | 364 | 30.044035 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 159 | 187 | 10.273145 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 393 | 537 | 25.516842 | IPR001650 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 25 | 51 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 310 | 318 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 537 | 716 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 618 | 632 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 702 | 716 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 588 | 617 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 633 | 653 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.2 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_024464972.1 | DEAD-box ATP-dependent RNA helicase 46 [Populus trichocarpa] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2KLV4 | DEAD-box ATP-dependent RNA helicase 46 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology