Basic Information
Locus ID:
nbisL1-mrna-3066
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000060F_pilon | 6849681 | 6852833 | - | nbisL1-mrna-3066 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 114,523.67 Da | 50.21 | 65.63 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 182 | 265 | 5.522E-26 | - |
| Pfam | PF00855 | PWWP domain | 181 | 264 | 7.9E-19 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 175 | 278 | 1.32E-26 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 168 | 274 | 2.0E-26 | - |
| SMART | SM00293 | PWWP_4 | 179 | 240 | 2.3E-10 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 181 | 242 | 15.183414 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 838 | 855 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 514 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 566 | 581 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 752 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 823 | 837 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 588 | 691 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 810 | 878 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40340.2 | - | 0 |
| RefSeq | XP_015578174.2 | PWWP domain-containing protein 3 isoform X2 [Ricinus communis] | 0 |
| Q9FNE4 | PWWP domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PDP3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JFT2 | Uncharacterized protein LOC8289805 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology