Basic Information
Locus ID:
nbisL1-mrna-3061
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
DNA (cytosine-5)-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 4047897 | 4056189 | + | nbisL1-mrna-3061 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 100,828.72 Da | 42.74 | 77.51 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 444 | 499 | 4.33866E-28 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 509 | 861 | 1.2E-30 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 444 | 497 | 8.1E-9 | IPR023780 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 328 | 862 | 2.5E-75 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 430 | 506 | 1.63E-12 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 313 | 411 | 2.7E-14 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 442 | 879 | 3.4E-219 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 102 | 272 | 2.3E-45 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 662 | 828 | 3.4E-219 | - |
| SMART | SM00439 | BAH_4 | 169 | 287 | 2.6E-11 | IPR001025 |
| SMART | SM00298 | chromo_7 | 443 | 502 | 0.003 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 169 | 287 | 17.840076 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 328 | 869 | 43.902466 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 444 | 497 | 10.819901 | IPR000953 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 603 | 616 | 8.2E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 329 | 345 | 8.2E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 557 | 571 | 8.2E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 138 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_021606189.1 | DNA (cytosine-5)-methyltransferase CMT3 [Manihot esculenta] | 0 |
| Q94F88 | DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana OX=3702 GN=CMT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2C9W5R9 | Cytosine-specific methyltransferase OS=Manihot esculenta OX=3983 GN=MANES_03G089100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology