Basic Information
Locus ID:
nbisL1-mrna-3056
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 2623952 | 2625404 | + | nbisL1-mrna-3056 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.86 | 39,771.38 Da | 63.48 | 80.81 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 136 | 179 | 8.77691E-18 | - |
| Pfam | PF13639 | Ring finger domain | 136 | 179 | 5.1E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 131 | 185 | 2.27E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 185 | 8.4E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 137 | 178 | 1.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 137 | 179 | 13.108904 | IPR001841 |
| Coils | Coil | Coil | 357 | 357 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021679581.1 | RING-H2 finger protein ATL52 [Hevea brasiliensis] | 0 |
| Q9LF64 | RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6KIX3 | RING-type E3 ubiquitin transferase OS=Hevea brasiliensis OX=3981 GN=GH714_004364 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology