Basic Information
Locus ID:
nbisL1-mrna-30502
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 17886703 | 17895880 | - | nbisL1-mrna-30502 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 78,381.43 Da | 48.68 | 82.33 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13990 | STKc_TLK | 411 | 684 | 0.0 | - |
| Pfam | PF00069 | Protein kinase domain | 413 | 685 | 3.9E-59 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 404 | 686 | 2.56E-74 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 403 | 691 | 5.1E-71 | - |
| SMART | SM00220 | serkin_6 | 412 | 685 | 9.0E-73 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 412 | 685 | 43.9617 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 538 | 550 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 418 | 441 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 188 | - | - |
| Coils | Coil | Coil | 306 | 333 | - | - |
| Coils | Coil | Coil | 363 | 397 | - | - |
| Coils | Coil | Coil | 205 | 232 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20930.1 | Protein kinase superfamily protein. Nuclear serine/threonine protein kinase that requires a coiled-coil region for oligomerization and catalytic activity. Required for leaf and flower development. Expression localized to the developing style by stage 13. | 0 |
| RefSeq | XP_048233944.1 | serine/threonine-protein kinase TOUSLED isoform X1 [Ricinus communis] | 0 |
| Q39238 | Serine/threonine-protein kinase TOUSLED OS=Arabidopsis thaliana OX=3702 GN=TOUSLED PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2L6U7 | Protein kinase domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS180724 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg36063, jg8090 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6874 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027765 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g171520 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1479, Sbi_jg35071 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3264 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003433 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72690, Sgl76229 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004778, gene:ENSEOMG00000037810 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0000710 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30055640 |
| Apiaceae | Apium graveolens | 1 | Ag10G01724 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G000310 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707239 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3395.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G10481 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G20930.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012855m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g23590.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g041980.2N, BniB05g042640.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1519 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1507 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g14000, gene.Cymno15g03560 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0296s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g39940 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.514 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00015729, Pov_00026563 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20252 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.720, CH01.717, Contig309.77 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0216050, gene-QOZ80_3BG0261310 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0510760.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_061822, gene-QYE76_061829 |
| Poaceae | Oryza coarctata | 2 | Oco05G023660, Oco06G024580 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g53880.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G080500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0107169, Pt_Chr0107179 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G005170, Chr04G028610, Chr07G027570, Chr12G037620 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G619000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG056770, gene_TRIDC5BG060940 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G389200.1, TraesCS5B02G394400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb057260_P002, Zm00001eb214860_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-16160 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2793 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1872, evm.TU.LG14.14 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g00650 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30502 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11234 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15954 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.304 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015541 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4222 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15224 |
| Salicaceae | Populus euphratica | 3 | populus_peu08523, populus_peu08524, populus_peu36825 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600682 |
| Solanaceae | Solanum chilense | 1 | SOLCI003293600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002889 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3652 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1255 |
| Zosteraceae | Zostera marina | 1 | Zosma06g30440.v3.1 |